NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209681_1000528

Scaffold Ga0209681_1000528


Overview

Basic Information
Taxon OID3300027520 Open in IMG/M
Scaffold IDGa0209681_1000528 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10045
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015059Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0209681_10005282F015059AGAAGVTSLGDEIYLLREKEGVDEVEVYDVVSYRLLCCLTVPKVRSFTDMTSCKHFLCLYIADPDVECIHRVDLGVQGNSTKWPVKDRPCGLSVNAAHNLMVTCDRVRKIKEFSPHGNLLREVTLPDDVINPWHAIQLTNGQFVVCHGGPGDQVNRVCMVSEDGGHIINSHGGQPGSNIGQYNGPIHLAVDDDEFVFVVNFYNRQVTLLSPTLDYIRPVVASDQLKGEPERLCLDVQRRHLYVTQNQHRDGKDTAGRVVVITL

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